[fluka-discuss]: Error running -o flukahp -m fluka

From: Eric F. Alemany <ealemany_at_stanford.edu>
Date: Mon, 7 Jun 2021 15:22:39 +0000

Dear FLUKA experts.

I have installed FLUKA by following the README file instructions and the archive email from other users

There is a an executable that was built "flukahp.map" after running "make"

Also, after running " flutil/lfluka -o flukahp -m fluka"

I have the following output (sorry about the length of the output). Please note at the end there is an error message: collect2: error: ld returned 1 exit status

How can I fix this issue?

Thank you for your help

root_at_mt-manager.stanford.edu [Wed Jun 02!08:36:08]:/opt/FLUKA# flutil/lfluka -o flukahp -m fluka
$FLUPRO = /opt/FLUKA
now linking
/opt/FLUKA
gfortran
ar x /opt/FLUKA/libflukahp.a fluka.o
gfortran -msse2 -mfpmath=sse -fPIC -O3 -g -mtune=generic -fexpensive-optimizations -funroll-loops -fstrength-reduce -Wall -Wuninitialized -Wno-tabs -Wline-truncation -Wno-unused-function -Wno-unused-parameter -Wno-unused-dummy-argument -Wno-integer-division -Wno-unused-variable -Wno-conversion -Wunused-label -Waggregate-return -Wcast-align -Wsystem-headers -ftrapping-math -frange-check -fbackslash -fdump-core -fbacktrace -ffpe-trap=invalid,zero,overflow -finit-local-zero -ffixed-form -frecord-marker=4 -funderscoring -fno-automatic -fd-lines-as-comments -fbounds-check -I/opt/FLUKA/flukapro -I/opt/FLUKA/aamodmvax -v -o flukahp -Xlinker -Map -Xlinker flukahp.map fluka.o -L/opt/FLUKA -lflukahp
Driving: gfortran -msse2 -mfpmath=sse -fPIC -O3 -g -mtune=generic -fexpensive-optimizations -funroll-loops -fstrength-reduce -Wall -Wuninitialized -Wno-tabs -Wline-truncation -Wno-unused-function -Wno-unused-parameter -Wno-unused-dummy-argument -Wno-integer-division -Wno-unused-variable -Wno-conversion -Wunused-label -Waggregate-return -Wcast-align -Wsystem-headers -ftrapping-math -frange-check -fbackslash -fdump-core -fbacktrace -ffpe-trap=invalid,zero,overflow -finit-local-zero -ffixed-form -frecord-marker=4 -funderscoring -fno-automatic -fd-lines-as-comments -fbounds-check -I/opt/FLUKA/flukapro -I/opt/FLUKA/aamodmvax -v -o flukahp -Xlinker -Map -Xlinker flukahp.map fluka.o -L/opt/FLUKA -lflukahp -l gfortran -l m -shared-libgcc
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/lto-wrapper
Target: x86_64-redhat-linux
Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/opt/rh/devtoolset-9/root/usr --mandir=/opt/rh/devtoolset-9/root/usr/share/man --infodir=/opt/rh/devtoolset-9/root/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --with-default-libstdcxx-abi=gcc4-compatible --enable-plugin --enable-initfini-array --with-isl=/builddir/build/BUILD/gcc-9.3.1-20200408/obj-x86_64-redhat-linux/isl-install --disable-libmpx --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux
Thread model: posix
gcc version 9.3.1 20200408 (Red Hat 9.3.1-2) (GCC)
Reading specs from /opt/rh/devtoolset-9/root/usr/lib/gcc/x86_64-redhat-linux/9/libgfortran.spec
rename spec lib to liborig
COLLECT_GCC_OPTIONS='-msse2' '-mfpmath=sse' '-fPIC' '-O3' '-g' '-mtune=generic' '-fexpensive-optimizations' '-funroll-loops' '-Wall' '-Wuninitialized' '-Wno-tabs' '-Wline-truncation' '-Wno-unused-function' '-Wno-unused-parameter' '-Wno-unused-dummy-argument' '-Wno-integer-division' '-Wno-unused-variable' '-Wno-conversion' '-Wunused-label' '-Waggregate-return' '-Wcast-align' '-Wsystem-headers' '-ftrapping-math' '-frange-check' '-fbackslash' '-fbacktrace' '-ffpe-trap=invalid,zero,overflow' '-finit-local-zero' '-ffixed-form' '-frecord-marker=4' '-funderscoring' '-fno-automatic' '-fd-lines-as-comments' '-fbounds-check' '-I' '/opt/FLUKA/flukapro' '-I' '/opt/FLUKA/aamodmvax' '-v' '-o' 'flukahp' '-L/opt/FLUKA' '-shared-libgcc' '-march=x86-64'
COMPILER_PATH=/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/:/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/:/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/:/opt/rh/devtoolset-9/root/usr/lib/gcc/x86_64-redhat-linux/9/:/opt/rh/devtoolset-9/root/usr/lib/gcc/x86_64-redhat-linux/
LIBRARY_PATH=/opt/rh/devtoolset-9/root/usr/lib/gcc/x86_64-redhat-linux/9/:/opt/rh/devtoolset-9/root/usr/lib/gcc/x86_64-redhat-linux/9/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/opt/rh/devtoolset-9/root/usr/lib/gcc/x86_64-redhat-linux/9/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-msse2' '-mfpmath=sse' '-fPIC' '-O3' '-g' '-mtune=generic' '-fexpensive-optimizations' '-funroll-loops' '-Wall' '-Wuninitialized' '-Wno-tabs' '-Wline-truncation' '-Wno-unused-function' '-Wno-unused-parameter' '-Wno-unused-dummy-argument' '-Wno-integer-division' '-Wno-unused-variable' '-Wno-conversion' '-Wunused-label' '-Waggregate-return' '-Wcast-align' '-Wsystem-headers' '-ftrapping-math' '-frange-check' '-fbackslash' '-fbacktrace' '-ffpe-trap=invalid,zero,overflow' '-finit-local-zero' '-ffixed-form' '-frecord-marker=4' '-funderscoring' '-fno-automatic' '-fd-lines-as-comments' '-fbounds-check' '-I' '/opt/FLUKA/flukapro' '-I' '/opt/FLUKA/aamodmvax' '-v' '-o' 'flukahp' '-L/opt/FLUKA' '-shared-libgcc' '-march=x86-64'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/collect2 -plugin /opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/liblto_plugin.so -plugin-opt=/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/lto-wrapper -plugin-opt=-fresolution=/tmp/ccpqNo4G.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --no-add-needed --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o flukahp /lib/../lib64/crt1.o /lib/../lib64/crti.o /opt/rh/devtoolset-9/root/usr/lib/gcc/x86_64-redhat-linux/9/crtbegin.o -L/opt/FLUKA -L/opt/rh/devtoolset-9/root/usr/lib/gcc/x86_64-redhat-linux/9 -L/opt/rh/devtoolset-9/root/usr/lib/gcc/x86_64-redhat-linux/9/../../../../lib64 -L/li!
 b/../lib64 -L/usr/lib/../lib64 -L/opt/rh/devtoolset-9/root/usr/lib/gcc/x86_64-redhat-linux/9/../../.. -Map flukahp.map fluka.o -lflukahp -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /opt/rh/devtoolset-9/root/usr/lib/gcc/x86_64-redhat-linux/9/crtend.o /lib/../lib64/crtn.o
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /opt/FLUKA/libflukahp.a(shptot.o): in function `master.0.shptot_':
/disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/elsmvax/shptot.f:3733: undefined reference to `_ZGVbN2v_log'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/elsmvax/shptot.f:3733: undefined reference to `_ZGVbN2v_log'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/elsmvax/shptot.f:3733: undefined reference to `_ZGVbN2v_log'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/elsmvax/shptot.f:3733: undefined reference to `_ZGVbN2v_log'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/elsmvax/shptot.f:3733: undefined reference to `_ZGVbN2v_log'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /opt/FLUKA/libflukahp.a(shptot.o):/disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/elsmvax/shptot.f:3733: more undefined references to `_ZGVbN2v_log' follow
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /opt/FLUKA/libflukahp.a(ncdtrd.o): in function `ncdtrd_':
/disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/evffrmvax/ncdtrd.f:192: undefined reference to `_ZGVbN2vv_pow'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/evffrmvax/ncdtrd.f:192: undefined reference to `_ZGVbN2vv_pow'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/evffrmvax/ncdtrd.f:194: undefined reference to `_ZGVbN2vv_pow'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/evffrmvax/ncdtrd.f:194: undefined reference to `_ZGVbN2vv_pow'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/evffrmvax/ncdtrd.f:194: undefined reference to `_ZGVbN2vv_pow'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /opt/FLUKA/libflukahp.a(ncdtrd.o):/disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/evffrmvax/ncdtrd.f:194: more undefined references to `_ZGVbN2vv_pow' follow
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /opt/FLUKA/libflukahp.a(unfldp.o): in function `unfldp_':
/disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/preeqmvax/unfldp.f:59: undefined reference to `_ZGVbN2v_exp'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/preeqmvax/unfldp.f:59: undefined reference to `_ZGVbN2v_exp'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/preeqmvax/unfldp.f:59: undefined reference to `_ZGVbN2v_exp'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/preeqmvax/unfldp.f:59: undefined reference to `_ZGVbN2v_exp'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/preeqmvax/unfldp.f:59: undefined reference to `_ZGVbN2v_exp'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /opt/FLUKA/libflukahp.a(unfldp.o):/disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/preeqmvax/unfldp.f:59: more undefined references to `_ZGVbN2v_exp' follow
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /opt/FLUKA/libflukahp.a(pgrv98.o): in function `pgrv98_':
/disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/nundismvax/pgrv98.f:206: undefined reference to `_ZGVbN2v_log'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/nundismvax/pgrv98.f:206: undefined reference to `_ZGVbN2v_log'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/nundismvax/pgrv98.f:206: undefined reference to `_ZGVbN2v_log'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/nundismvax/pgrv98.f:206: undefined reference to `_ZGVbN2v_log'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/nundismvax/pgrv98.f:206: undefined reference to `_ZGVbN2v_log'
/opt/rh/devtoolset-9/root/usr/libexec/gcc/x86_64-redhat-linux/9/ld: /opt/FLUKA/libflukahp.a(pgrv98.o):/disk6/fluka/git/MYBUILDS/GCC9/fluprogfor/nundismvax/pgrv98.f:206: more undefined references to `_ZGVbN2v_log' follow
collect2: error: ld returned 1 exit status


Eric F. Alemany
Systems Administrator for Research
EXO - Extended Operations
Stanford Medicine - Technology & Digital Services



“One for All, All for One"
 
 



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Received on Mon Jun 07 2021 - 19:15:09 CEST

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