Re: [fluka-discuss]: No raness or out or err files generated from fluka 2021 on a server

From: Stefan E. Mueller <stefan.mueller_at_hzdr.de>
Date: Wed, 7 Jul 2021 13:50:45 +0200 (CEST)

Hi Tamer,

the .log-file in the fluka_23617-directory complains that it can't open
(can't find?) the shared library "libgfortran.so.5" needed by flukahp.

So maybe there is some problem with your gfortran setup (at least when
you run on the commandline, I don't know if this also explains the
problem when using the queue system).

Maybe there is a mismatch between the gfortran that is set up in your
account and the one with which FLUKA was installed.

Does

gcc --version

give the version with which FLUKA is installed?

In my case, libgfortran.so.5 is in

/usr/lib/x86_64-linux-gnu/libgfortran.so.5

and this directory is listed (among others) when I do

echo $LD_LIBRARY_PATH

So you might want to make sure that the directory with libgfortran.so.5 is
listed in the environmental variable "LD_LIBRARY_PATH".

Hope this helps,

         Stefan

--
Stefan E. Mueller
Department of Information Services and Computing - Computational Science
and Institute of Radiation Physics
Helmholtz-Zentrum Dresden-Rossendorf
Tel: +49 (0351) 260 3847
Stefan.Mueller_at_hzdr.de
http://www.hzdr.de
Vorstand: Prof. Dr. Sebastian M. Schmidt, Dr. Diana Stiller
Vereinsregister: VR 1693 beim Amtsgericht Dresden
On Wed, 7 Jul 2021, Tamer Tolba wrote:
> 
> Hi Stefan,
> 
> No, the fluka_33429 file was deleted automatically. Anyways, I re-run it
> from the command line as you requested:
> 
> ttolba_at_login1:~/FLUKA_Sim/ESSvSB_4Horns/ESSvSB_D_4Horns$
> $FLUPRO/flutil/rfluka -M 3 ess_D_4horn_SegBlocks_ur.inp
> $TARGET_MACHINE = Linux
> $FLUPRO = /opt/sw/fluka/2021.2.0
> 
> Initial seed copied from /opt/sw/fluka/2021.2.0
> Running fluka in/afs/physnet.uni-hamburg.de/users/AU/ttolba/FLUKA_Sim/ESSvSB_4Horns/ESSvSB_
> D_4Horns/fluka_23617
> ================================ Running FLUKA for cycle # 1
> =============================================
> 
> ttolba_at_login1:~/FLUKA_Sim/ESSvSB_4Horns/ESSvSB_D_4Horns$
> 
> Attached, please find the "compressed" fluka_23617 file. Hope this helps in
> defining the problem!
> 
> Regards,
> 
> Tamer
> 
> On 7/7/2021 11:55 AM, Stefan E. Mueller wrote:
>       Dear Tamer,
>
>       is the FLUKA working directory
>
>       fluka_33429/
>
>       still present, or was it deleted? Sometimes, some files survive
>       in the working directory.
>
>       It seems your run fails before it moves the relevant files from
>       the FLUKA working directory fluka_33429/ one level up to your
>       home directory.
>
>       Maybe there is a problem of permissions, or over-quota
>       diskspace?
>
>       If you run FLUKA on the commandline (without a queuing system),
>       is the result similar?
>
>       Cheers,
>
>           Stefan
>
>       --
>       Stefan E. Mueller
>       Department of Information Services and Computing - Computational
>       Science
>       and Institute of Radiation Physics
>       Helmholtz-Zentrum Dresden-Rossendorf
>       Tel: +49 (0351) 260 3847
>       Stefan.Mueller_at_hzdr.de
>       http://www.hzdr.de
>
>       Vorstand: Prof. Dr. Sebastian M. Schmidt, Dr. Diana Stiller
>       Vereinsregister: VR 1693 beim Amtsgericht Dresden
>
>       On Wed, 7 Jul 2021, Tamer Tolba wrote:
>
>             Dear FLUKA experts,
>
>             We have installed fluka 2021 on the Uni. server (we
>             had 2011 working properly before on the same
>             server). I tried to run 3 cycles of a fluka code,
>             which runs perfectly on my personal PC, on that
>             server. The job that should take at least 30 min was
>             finished, on the queue, in few second with no error
>             message! However, no results were generated.
>             However, 3 empty *.log files (for the 3 cycles), a
>             raness_* file for the first cycle and a
>             FlukaBash.oxxxxxxx file are generated (please find
>             them at the attachment).
>
>             Since the code runs on my PC, so I am sure that it
>             is not a code problem, it must be the installation
>             on the server, but without an obvious error message
>             it is hard for me to define the problem! There are
>             some information in the FlukaBash.oxxxxxxx file.
>
>             Would you please help my in resolving this problem.
>
>             Best regards,
>
>             Tamer
>
>             -- 
>             Dr. Tamer Tolba
>             Institut für Experimentalphysik,
>             Universität Hamburg ,
>             Luruper Chaussee 149,
>             22761 Hamburg - Germany
>
>             Tel.: +49 (0)40-8998-4872
> 
> 
> -- 
> Dr. Tamer Tolba
> Institut für Experimentalphysik,
> Universität Hamburg ,
> Luruper Chaussee 149,
> 22761 Hamburg - Germany
> 
> Tel.: +49 (0)40-8998-4872
> 
>

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Received on Wed Jul 07 2021 - 15:24:43 CEST