Re: How to combine data of different FLUKA runs

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Hi Roger

If I understand your file structure correctly then the input should be in=
=20
=20
~/flukawork/test

and not in the subdirectory run1.

Cheers
Stefan

On Thu, 23 Apr 2009, Roger H=E4lg wrote:

> Hi Stefan
>=20
> Thanks for your hints.
> Yes, I did check these files. The problem is, that fort.11, fort.12,
> fort.15 and fort.2 are dead links:
>=20
> ~/flukawork/test/fluka_10140 $ ls -lh
> total 0
> lrwxrwxrwx 1 rhaelg rhaelg 27 Apr 22 18:08 elasct.bin
> -> /usr/local/fluka/elasct.bin
> lrwxrwxrwx 1 rhaelg rhaelg 27 Apr 22 18:08 fluodt.dat
> -> /usr/local/fluka/fluodt.dat
> lrwxrwxrwx 1 rhaelg rhaelg 45 Apr 22 18:08 fort.1
> -> /home/rhaelg/flukawork/test/ranneutron_rw3001
> lrwxrwxrwx 1 rhaelg rhaelg 18 Apr 22 18:08 fort.11 -> neutron_rw3001.out
> lrwxrwxrwx 1 rhaelg rhaelg 44 Apr 22 18:08 fort.12
> -> /usr/local/fluka/libec_thihecufealw_10t.pemf
> lrwxrwxrwx 1 rhaelg rhaelg 18 Apr 22 18:08 fort.15 -> neutron_rw3001.err
> lrwxrwxrwx 1 rhaelg rhaelg 17 Apr 22 18:08 fort.2 -> ranneutron_rw3002
> lrwxrwxrwx 1 rhaelg rhaelg 35 Apr 22 18:08 neuxsc.bin
> -> /usr/local/fluka/neuxsc-ind_260.bin
> lrwxrwxrwx 1 rhaelg rhaelg 28 Apr 22 18:08 nuclear.bin
> -> /usr/local/fluka/nuclear.bin
> lrwxrwxrwx 1 rhaelg rhaelg 28 Apr 22 18:08 sigmapi.bin
> -> /usr/local/fluka/sigmapi.bin
> lrwxrwxrwx 1 rhaelg rhaelg 27 Apr 22 18:08 xnloan.dat
> -> /usr/local/fluka/xnloan.dat
>=20
> nohup.out has the following content when just running the run in the
> subfolder:
>=20
> $TARGET_MACHINE =3D Linux
> $FLUPRO =3D /usr/local/fluka
> $PEMF =3D /usr/local/fluka/libec_thihecufealw_10t.pemf
>=20
> Initial seed copied from /usr/local/fluka
> Running fluka in /home/rhaelg/flukawork/test/fluka_10140cp: cannot stat
> `run1/neutron_rw3.inp': No such file or directory
>=20
>=20
> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D Run=
ning FLUKA for cycle # 1
> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
> /usr/local/fluka/flutil/rfluka: line 280: neutron_rw3.inp: No such file
> or directory
>=20
> But the stated file exists:
>=20
> ~/flukawork/test $ ls -lh run1/
> total 8.0K
> -rw-r--r-- 1 rhaelg rhaelg 7.4K Apr 22 18:08 neutron_rw3.inp
>=20
> I guess it is a problem with the paths. Any further suggestions?
>=20
> Greetz
>=20
> Roger
>=20
> On Sun, 2009-04-19 at 13:45 +0200, Stefan Roesler wrote:
> > Hi Roger,
> >=20
> > Did you check the content of fort.11 (the standard FLUKA output file) a=
nd=20
> > fort.15 (the error file)? Also see nohup.out which should have been=20
> > created in ~/flukawork/test and which contains the printouts from rfluk=
a.=20
> > In case of doubt please send me those files.
> >=20
> > Cheers
> > Stefan
> >=20
> >=20
> > On Fri, 17 Apr 2009, Roger H=E4lg wrote:
> >=20
> > > Hi Vasilis
> > >=20
> > > Thank you for your answer. Your second way works fine. But I was not
> > > able to get your first suggestion to work.=20
> > >=20
> > > I can duplicate my standard run in the Run Fluka tab. I save the inpu=
t
> > > file in an already created subfolder of the standard run. I enter a
> > > Number for the random seed and select the executable.=20
> > > When I start the run by clicking Run, flair tries to attach to the ru=
n.
> > > After a few minutes the Status changes to Finished OK, without starti=
ng
> > > to calculate anything. The standard run in the main directory finishe=
s
> > > successfully. So I guess it is not because of the input file.=20
> > >=20
> > > I tried to copy some eventually needed files to the subdirectory,
> > > without any success.
> > >=20
> > > I see the following commands in the flair output:
> > >=20
> > > Cmd: /usr/bin/nohup /usr/local/fluka/flutil/rfluka -e myfluka -M 3 ne=
utron_rw3=20
> > > /usr/bin/nohup: ignoring input and appending output to `nohup.out'
> > > =20
> > > Cmd: /usr/bin/nohup /usr/local/fluka/flutil/rfluka -e myfluka -M 3 ru=
n1/neutron_rw3=20
> > > /usr/bin/nohup: ignoring input and appending output to `nohup.out'
> > >=20
> > > A temporary directory is created for the run in the subfolder and it =
isn't deleted after finishing the run. It contains the following files:
> > >=20
> > > ~/flukawork/test $ ls fluka_17313
> > > elasct.bin fort.1 fort.12 fort.2 nuclear.bin xnloan.dat
> > > fluodt.dat fort.11 fort.15 neuxsc.bin sigmapi.bin
> > >=20
> > > The manually created subdirectory only contains the input file.=20
> > >=20
> > > Any suggestions what I am doing wrong?
> > >=20
> > > Best Regards
> > >=20
> > > Roger
> > >=20
> > > On Tue, 2009-04-07 at 18:10 +0200, Vasilis Vlachoudis wrote:
> > > > Hi Roger,
> > > >=20
> > > > there are two ways in flair.
> > > >=20
> > > > 1. Create the runs in sub-folders. From version 0.7.6 you have this=
=20
> > > > possibility
> > > > and then in the Data Process frame you mark the "Recursive"=20
> > > > checkbox. Then it will
> > > > scan all sub-folders for the same pattern.
> > > > =20
> > > > 2. In the Data frame select the master run and select also the dete=
ctor(s).
> > > > You click the "fitler" button right to the file display.
> > > > Flair will popup a dialog to enter the pattern to search. It may=
 look=20
> > > > a bit confusing in the begging but the most important rules are wri=
tten=20
> > > > in the syntax text box.
> > > > Lets say that the auxiliary runs you created them by adding a=20
> > > > numerical suffix 2,3,... then modify the rule to
> > > > +^\I\d\d\d\d_fort.\U$
> > > > The first +/- is to include or remove a file,
> > > > ^ means that the pattern should match the beginning of the string
> > > > \I is substituted by flair with the filename of the input file (wit=
hout=20
> > > > the .inp)
> > > > \d is any digit from 0-9 (I've added an extra one from the default =
three=20
> > > > digits corresponding to the cycle added by fluka)
> > > > \U is the unit number
> > > > $ means the pattern should match also the end of the string
> > > >=20
> > > > click ok and process
> > > >=20
> > > > WARNING you can have different patterns for each Usrxx detector. Bu=
t if=20
> > > > you select several then only from the pattern of the first selected=
=20
> > > > detector will appear.
> > > >=20
> > > > Best Regards
> > > > Vasilis
> > >=20
> > >=20
> > >=20
> > >=20
> >=20
>=20
>=20
>=20

--=20
___________________________________

Stefan Roesler
CERN, SC/RP
CH-1211 Geneva 23
Switzerland

Phone: +41-22-7679891
Fax: +41-22-7669639
E-mail: Stefan.Roesler_at_cern.ch
Received on Thu Apr 23 2009 - 22:44:08 CEST