Dear Paola and all,
Thanks for your clue, indeed it seems this is the problem. We have FLUKA
installed at two machines, one named CLASAFETY02 and another one
HPCNODE014, the cluster one. At CLASAFETY02, Fluka runs smoothly and
your query returns *ldd (GNU libc) 2.28*. At HPCNODE014 FLUKA does not
run and your query returns *ldd (GNU libc) 2.17*. So it seems we have
the same situation as Dr. M. Benmerrouche, our cluster is also shared by
many people in ALBA and upgrading is not an option now.
Consequently and guessing there is no other solution, we also would
appreciate if you could make available now and in the near future a
fluka binary that is compatible with glib 2.17. Sorry Dr. Benmerrouche
for taking the liberty of copying your sentence literally.
Thanking you deeply for all your efforts and waiting for the best,
Maria Jose
PS: In case it is useful, please find below the summary provided by our
IT people:
*CLASAFETY02 (TEST NODE) Working *
===========
pcarnicer_at_pc331:~$ ssh -X clasafety02
gcc (GCC) 8.3.1 20190223 (Red Hat 8.3.1-2)
Copyright (C) 2018 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
[pcarnicer_at_clasafety02 /]$ gfortran --version
GNU Fortran (GCC) 8.3.1 20190223 (Red Hat 8.3.1-2)
Copyright (C) 2018 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
[pcarnicer_at_clasafety02 /]$ ldd --version
*ldd (GNU libc) 2.28*
Copyright (C) 2018 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Written by Roland McGrath and Ulrich Drepper.
[pcarnicer_at_clasafety02 /]$
*HPCNODE014* (CLUSTER NODE) Segmentation fault error
===========
pcarnicer_at_hpcnode014:~$ gcc --version
gcc (GCC) 8.3.0
Copyright (C) 2018 Free Software Foundation, Inc.
Esto es software libre; vea el código para las condiciones de copia. NO hay
garantía; ni siquiera para MERCANTIBILIDAD o IDONEIDAD PARA UN PROPÓSITO EN
PARTICULAR
pcarnicer_at_hpcnode014:~$ gfortran --version
GNU Fortran (GCC) 8.3.0
Copyright (C) 2018 Free Software Foundation, Inc.
Esto es software libre; vea el código para las condiciones de copia. NO hay
garantía; ni siquiera para MERCANTIBILIDAD o IDONEIDAD PARA UN PROPÓSITO EN
PARTICULAR
pcarnicer_at_hpcnode014:~$ ldd --version
*ldd (GNU libc) 2.17*
Copyright (C) 2012 Free Software Foundation, Inc.
Esto es software libre; vea el código fuente para las condiciones de copia.
No hay NINGUNA garantía; ni siquiera de COMERCIABILIDAD o IDONEIDAD PARA UN
FIN DETERMINADO.
Escrito por Roland McGrath y Ulrich Drepper.
On 14/06/2020 16:56, Answers wrote:
> Hello
> could indeed be a compiler/binutils/glibc mismatch problem.
> Could you please specify which version of glibc and binutils you have?
> (can be found with ld --version
> ldd --version )
>
> Thanks
> Paola
> On Mon, 8 Jun 2020, María José García Fusté wrote:
>
>> Good afternoon,
>>
>> At ALBA Synchrotron we have been using FLUKA smoothly without
>> problems for a long time but we seem unable to install correctly the
>> last version in our HPC cluster. I attach a summary of the steps
>> undertaken to install FLUKA by our IT systems team and the error
>> files that we get when trying to run a file that was already tested
>> in previous versions and run succesfully.
>>
>> Any help would be highly appreciated, as we plan to endevour in some
>> new Beamlines shielding calculations that cannot be done without the
>> cluster,
>>
>> Thanks for your attention,
>>
>> Dr. Maria-Jose Garcia-Fuste
>>
>> --
>>
>>
>> Ph.D María-José García-Fusté
>>
>> Radiation Protection Officer- Health & Safety Office
>>
>> ALBA SYNCHROTRON
>> Carrer de la Llum 2-26 | 08290 | Cerdanyola del Vallès| Barcelona |
>> Spain <http://www.albasynchrotron.es/en/about/coming-to-alba>
>> (+34) 93 592 4396 | mobile (+34) 649 609 968
>> www.albasynchrotron.es <http://www.albasynchrotron.es>|
>> mgarcia_at_cells.es <mailto:mgarcia_at_cells.es> | legal notice
>> <https://www.albasynchrotron.es/en/about/legal-notice>
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>>
>> Fluka2020.0.3 Problem
>>
>> ==============
>>
>> Source:
>> https://www.fluka.org/packages/fluka2020.0-linux-gfor64bit-8.3-AA.tar.gz
>> File: fluka2020.0-linux-gfor64bit-8.3-AA.tar.gz
>>
>> We have installed Fluka 2020 with EasyBuild. Installed and compiled
>> using GCC 8.3 with no errors:
>>
>> # Built with EasyBuild version 3.9.0 on 2020-04-21
>> easyblock = 'MakeCp'
>>
>> name = 'fluka'
>> version = '2020.0'
>> versionsuffix = '-gfor64bit-8.3-AA'
>>
>> homepage='https://www.fluka.org/fluka.php?id=download&sub=packages'
>> description = """FLUKA is a general purpose tool for calculations of
>> particle transport and interactions with matter, covering an extended
>> range of applications spanning from proton and electron accelerator
>> shielding to target design, calorimetry, activation, dosimetry,
>> detector design, Accelerator Driven Systems, cosmic rays, neutrino
>> physics, radiotherapy etc"""
>>
>> toolchain = {'name': 'GCC', 'version':'8.3.0-2.32'}
>> toolchainopts = {'noopt': True, 'strict': True}
>>
>> sources=['%s%s-linux%s.tar.gz' % (name.lower(), version, versionsuffix)]
>>
>> files_to_copy = ['*']
>>
>> sanity_check_paths = {
>> 'files': ['flukahp','flukahp.map'],
>> 'dirs': []
>> }
>>
>> modextravars = {'FLUFOR': 'gfortran'}
>> modextravars = {'FLUPRO': '%(installdir)s'}
>> modextrapaths = {'PATH': 'flutil'}
>> moduleclass = 'phys'
>>
>> With the old FLUKA version this method had worked correctly
>> (2011.2x.6, 2011.2x-8). Now, when we try to "Run", we get try
>> following message:
>>
>> Find error output files attached.
>>
>> Regards
>>
>>
>>
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Received on Tue Jun 16 2020 - 00:19:42 CEST